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Structure of the bacteriophage K gp155 C-terminal domain, seleno-methionine modified version
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 20% (w/v)PEG 1500, 100 mM HEPES-NaOH pH 7.5, 10 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.08 40.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.397 α = 90 b = 42.861 β = 90 c = 123.646 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97872 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 123.65 89.4 0.089 0.093 0.027 0.998 20.9 10.7 26390 17.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.71 56.1 0.471 0.529 0.232 0.729 3.2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.621 61.823 26329 1266 89.387 0.159 0.1582 0.158 0.1837 0.1831 18.598
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.426 -0.102 -0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.642 r_dihedral_angle_4_deg 17.529 r_dihedral_angle_3_deg 10.73 r_dihedral_angle_1_deg 6.731 r_lrange_it 4.236 r_lrange_other 4.054 r_scangle_it 2.662 r_scangle_other 2.647 r_scbond_it 1.691 r_scbond_other 1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.642 r_dihedral_angle_4_deg 17.529 r_dihedral_angle_3_deg 10.73 r_dihedral_angle_1_deg 6.731 r_lrange_it 4.236 r_lrange_other 4.054 r_scangle_it 2.662 r_scangle_other 2.647 r_scbond_it 1.691 r_scbond_other 1.68 r_mcangle_other 1.65 r_mcangle_it 1.647 r_angle_other_deg 1.326 r_angle_refined_deg 1.319 r_mcbond_it 1.031 r_mcbond_other 1.019 r_nbd_refined 0.194 r_nbd_other 0.168 r_symmetry_nbd_other 0.165 r_nbtor_refined 0.163 r_xyhbond_nbd_refined 0.143 r_symmetry_xyhbond_nbd_refined 0.12 r_symmetry_nbd_refined 0.114 r_metal_ion_refined 0.098 r_symmetry_xyhbond_nbd_other 0.096 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1862 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling CRANK2 phasing