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Crystal structure of human CLK3 bound to RN129
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 278 15% PEG 6k
0.1M bicine 8.0
Crystal Properties Matthews coefficient Solvent content 3.19 61.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.587 α = 90 b = 74.587 β = 90 c = 97.035 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99999 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 48.52 100 0.999 17.4 14 14673
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 0.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 46.38 13999 650 99.94 0.20583 0.20307 0.2098 0.26833 0.2628 RANDOM 76.141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.56 -1.56 3.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.444 r_long_range_B_refined 10.012 r_long_range_B_other 10.011 r_dihedral_angle_2_deg 8.72 r_scangle_other 7.41 r_dihedral_angle_1_deg 7.287 r_mcangle_it 7.004 r_mcangle_other 7.002 r_scbond_it 5.081 r_scbond_other 4.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.444 r_long_range_B_refined 10.012 r_long_range_B_other 10.011 r_dihedral_angle_2_deg 8.72 r_scangle_other 7.41 r_dihedral_angle_1_deg 7.287 r_mcangle_it 7.004 r_mcangle_other 7.002 r_scbond_it 5.081 r_scbond_other 4.822 r_mcbond_it 4.655 r_mcbond_other 4.65 r_angle_refined_deg 1.352 r_angle_other_deg 0.45 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2580 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing