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The FK1 domain of FKBP51 in complex with (3S,11S)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 34% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.31 46.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.137 α = 90 b = 54.524 β = 90 c = 56.232 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 16M 2023-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.885603 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 56.23 98.7 0.04 0.046 0.023 0.999 23.6 7 44945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.18 0.149 0.173 0.087 0.986 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.16 39.175 44889 2145 98.482 0.144 0.1424 0.1542 0.1686 0.1761 14.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 -0.558 -0.172
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.036 r_dihedral_angle_6_deg 16.674 r_lrange_other 16.209 r_scangle_it 11.018 r_scangle_other 11.01 r_dihedral_angle_3_deg 10.892 r_scbond_it 9.747 r_scbond_other 9.738 r_dihedral_angle_1_deg 7.738 r_dihedral_angle_2_deg 6.597
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.036 r_dihedral_angle_6_deg 16.674 r_lrange_other 16.209 r_scangle_it 11.018 r_scangle_other 11.01 r_dihedral_angle_3_deg 10.892 r_scbond_it 9.747 r_scbond_other 9.738 r_dihedral_angle_1_deg 7.738 r_dihedral_angle_2_deg 6.597 r_mcangle_it 5.777 r_mcangle_other 5.776 r_rigid_bond_restr 4.932 r_mcbond_it 4.048 r_mcbond_other 3.962 r_angle_refined_deg 1.997 r_angle_other_deg 0.692 r_dihedral_angle_other_2_deg 0.684 r_symmetry_xyhbond_nbd_refined 0.293 r_nbd_other 0.215 r_xyhbond_nbd_refined 0.212 r_nbd_refined 0.201 r_symmetry_nbd_other 0.199 r_nbtor_refined 0.182 r_symmetry_nbd_refined 0.136 r_chiral_restr 0.117 r_symmetry_nbtor_other 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 955 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing