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The FK1 domain of FKBP51 in complex with (3S,11S,11aS)-12-((3,5-dichlorophenyl)sulfonyl)-5-oxo-11-vinyldecahydro-1H-6,10-epiminopyrrolo[1,2-a]azonine-3-carboxylic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 34% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.31 46.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.077 α = 90 b = 54.553 β = 90 c = 56.322 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 16M 2023-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.885603 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 56.32 86.5 0.064 0.074 0.038 0.997 17.8 7.1 39328
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.18 0.187 0.217 0.109 0.98 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.16 33.732 39277 1867 86.149 0.14 0.1392 0.1498 0.168 0.1714 13.515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.449 -0.233 0.683
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.005 r_dihedral_angle_6_deg 16.798 r_lrange_other 12.568 r_dihedral_angle_3_deg 10.217 r_dihedral_angle_1_deg 7.651 r_scangle_it 7.154 r_scangle_other 7.149 r_dihedral_angle_2_deg 6.232 r_scbond_it 5.095 r_mcangle_it 5.093
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 17.005 r_dihedral_angle_6_deg 16.798 r_lrange_other 12.568 r_dihedral_angle_3_deg 10.217 r_dihedral_angle_1_deg 7.651 r_scangle_it 7.154 r_scangle_other 7.149 r_dihedral_angle_2_deg 6.232 r_scbond_it 5.095 r_mcangle_it 5.093 r_mcangle_other 5.093 r_scbond_other 5.091 r_rigid_bond_restr 3.911 r_mcbond_it 3.638 r_mcbond_other 3.527 r_angle_refined_deg 1.893 r_angle_other_deg 0.651 r_symmetry_xyhbond_nbd_refined 0.276 r_xyhbond_nbd_refined 0.27 r_nbd_other 0.247 r_symmetry_nbd_refined 0.227 r_nbd_refined 0.208 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.182 r_chiral_restr 0.117 r_symmetry_nbtor_other 0.089 r_bond_refined_d 0.013 r_dihedral_angle_other_2_deg 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 958 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing