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The sTeLIC pentameric Ligand-Gated Ion Channel (wild-type) in complex with 4-Bromophenethylamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FL9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 150 mM MgCl2 20mM Tris pH 8.0 35% PEG 200
Crystal Properties Matthews coefficient Solvent content 4.36 71.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.21 α = 90 b = 112.345 β = 106.178 c = 210.796 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.919 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.006 25.001 99 0.997 6.94 2 63534
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.01 3.117 0.891
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.006 25.001 63358 3175 98.907 0.243 0.2412 0.2746 0.2807 0.3151 97.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.333 -13.308 1.543 17.557
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.257 r_dihedral_angle_3_deg 19.742 r_dihedral_angle_4_deg 17.86 r_lrange_it 15.187 r_lrange_other 15.185 r_scangle_it 10.953 r_scangle_other 10.952 r_mcangle_it 10.607 r_mcangle_other 10.606 r_dihedral_angle_1_deg 7.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.257 r_dihedral_angle_3_deg 19.742 r_dihedral_angle_4_deg 17.86 r_lrange_it 15.187 r_lrange_other 15.185 r_scangle_it 10.953 r_scangle_other 10.952 r_mcangle_it 10.607 r_mcangle_other 10.606 r_dihedral_angle_1_deg 7.56 r_mcbond_it 6.797 r_mcbond_other 6.797 r_scbond_it 6.735 r_scbond_other 6.735 r_angle_refined_deg 1.427 r_angle_other_deg 1.231 r_symmetry_nbd_refined 0.453 r_nbd_refined 0.253 r_symmetry_xyhbond_nbd_refined 0.251 r_nbd_other 0.247 r_xyhbond_nbd_refined 0.223 r_symmetry_nbd_other 0.222 r_symmetry_xyhbond_nbd_other 0.197 r_nbtor_refined 0.18 r_ncsr_local_group_9 0.108 r_ncsr_local_group_4 0.107 r_ncsr_local_group_10 0.105 r_ncsr_local_group_7 0.101 r_symmetry_nbtor_other 0.078 r_ncsr_local_group_8 0.072 r_ncsr_local_group_3 0.068 r_ncsr_local_group_2 0.067 r_chiral_restr 0.063 r_ncsr_local_group_6 0.062 r_ncsr_local_group_1 0.06 r_ncsr_local_group_5 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12840 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 155
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing