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Binary structure of 14-3-3s and BRAF phosphopeptide (pS365)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.97 58.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.783 α = 90 b = 96.043 β = 90 c = 80.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.873128 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 80.44 99.3 0.998 14.4 13.5 38175
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 0.694 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 62.27 36201 1933 99.18 0.18669 0.18484 0.1911 0.221 0.2177 RANDOM 37.648
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -5.69 6.1
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 16.656 r_long_range_B_other 15.646 r_dihedral_angle_3_deg 13.891 r_scangle_other 10.574 r_mcangle_it 9.05 r_mcangle_other 9.049 r_scbond_it 7.13 r_scbond_other 7.112 r_dihedral_angle_1_deg 6.248 r_mcbond_it 6.224
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 16.656 r_long_range_B_other 15.646 r_dihedral_angle_3_deg 13.891 r_scangle_other 10.574 r_mcangle_it 9.05 r_mcangle_other 9.049 r_scbond_it 7.13 r_scbond_other 7.112 r_dihedral_angle_1_deg 6.248 r_mcbond_it 6.224 r_mcbond_other 6.212 r_rigid_bond_restr 4.205 r_angle_refined_deg 1.295 r_angle_other_deg 0.499 r_chiral_restr 0.067 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1866 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 3
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing