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The FK1 domain of FKBP51 in complex with SAFit-analog 23d
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5 10% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.952 α = 90 b = 48.952 β = 90 c = 195.947 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.99 99.9 0.186 0.209 0.093 0.996 7.4 8.3 10131
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 1.739 1.969 0.894 0.622 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 42.43 10081 478 99.753 0.258 0.2562 0.2542 0.3042 0.3016 45.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.631 -0.816 -1.631 5.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.902 r_dihedral_angle_3_deg 13.641 r_dihedral_angle_1_deg 8.637 r_dihedral_angle_2_deg 5.508 r_lrange_it 5.133 r_lrange_other 5.132 r_mcangle_it 3.339 r_mcangle_other 3.337 r_scangle_it 3.195 r_scangle_other 3.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.902 r_dihedral_angle_3_deg 13.641 r_dihedral_angle_1_deg 8.637 r_dihedral_angle_2_deg 5.508 r_lrange_it 5.133 r_lrange_other 5.132 r_mcangle_it 3.339 r_mcangle_other 3.337 r_scangle_it 3.195 r_scangle_other 3.194 r_mcbond_it 2.031 r_mcbond_other 2.031 r_scbond_it 1.926 r_scbond_other 1.925 r_angle_refined_deg 1.673 r_chiral_restr_other 1.54 r_angle_other_deg 1.385 r_nbd_refined 0.21 r_symmetry_nbd_other 0.203 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.151 r_nbd_other 0.14 r_ncsr_local_group_1 0.098 r_symmetry_nbtor_other 0.09 r_symmetry_nbd_refined 0.081 r_chiral_restr 0.072 r_symmetry_xyhbond_nbd_refined 0.044 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1773 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing