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The FK1 domain of FKBP51 in complex with SAFit-analog 15i
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.4 48.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.896 α = 90 b = 48.896 β = 90 c = 194.925 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 2M 2021-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 42.381 100 0.054 0.057 0.018 0.999 27.4 19 26175
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 1.006 1.056 0.319 0.875 20.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 42.381 26104 1314 99.977 0.221 0.2197 0.2191 0.2573 0.2549 36.181
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.469 -0.234 -0.469 1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.641 r_dihedral_angle_3_deg 11.616 r_dihedral_angle_1_deg 8.453 r_lrange_it 6.008 r_lrange_other 5.988 r_dihedral_angle_2_deg 4.137 r_scangle_it 3.503 r_scangle_other 3.502 r_mcangle_it 3.32 r_mcangle_other 3.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.641 r_dihedral_angle_3_deg 11.616 r_dihedral_angle_1_deg 8.453 r_lrange_it 6.008 r_lrange_other 5.988 r_dihedral_angle_2_deg 4.137 r_scangle_it 3.503 r_scangle_other 3.502 r_mcangle_it 3.32 r_mcangle_other 3.319 r_scbond_it 2.412 r_scbond_other 2.411 r_mcbond_it 2.324 r_mcbond_other 2.324 r_angle_refined_deg 1.796 r_chiral_restr_other 1.48 r_angle_other_deg 1.148 r_symmetry_nbd_refined 0.444 r_nbd_refined 0.211 r_symmetry_nbd_other 0.195 r_symmetry_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.177 r_nbd_other 0.153 r_xyhbond_nbd_refined 0.142 r_ncsr_local_group_1 0.096 r_chiral_restr 0.084 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1848 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing