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The FK1 domain of FKBP51 in complex with SAFit-analog 15h
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.24 44.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.293 α = 90 b = 48.293 β = 90 c = 186.026 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.51 100 0.144 0.16 0.069 0.995 7.5 9.6 11940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 1.284 1.424 0.611 0.696 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 41.858 11868 610 99.739 0.234 0.2328 0.2327 0.2595 0.2607 54.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.582 -1.291 -2.582 8.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.475 r_dihedral_angle_6_deg 13.002 r_dihedral_angle_1_deg 8.647 r_lrange_it 7.194 r_lrange_other 7.192 r_dihedral_angle_2_deg 6.82 r_mcangle_it 5.464 r_mcangle_other 5.462 r_scangle_it 4.805 r_scangle_other 4.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.475 r_dihedral_angle_6_deg 13.002 r_dihedral_angle_1_deg 8.647 r_lrange_it 7.194 r_lrange_other 7.192 r_dihedral_angle_2_deg 6.82 r_mcangle_it 5.464 r_mcangle_other 5.462 r_scangle_it 4.805 r_scangle_other 4.803 r_mcbond_it 3.539 r_mcbond_other 3.539 r_scbond_it 3.045 r_scbond_other 3.044 r_angle_refined_deg 1.902 r_chiral_restr_other 0.875 r_angle_other_deg 0.772 r_nbd_refined 0.204 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.181 r_symmetry_nbd_refined 0.173 r_symmetry_xyhbond_nbd_refined 0.15 r_xyhbond_nbd_refined 0.147 r_nbd_other 0.147 r_ncsr_local_group_1 0.112 r_chiral_restr 0.085 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1818 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing