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The FK1 domain of FKBP51 in complex with SAFit-analog 23j
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 45% Pentaerythritol propoxylate 5/4 PO/OH, 15% ethanol
Crystal Properties Matthews coefficient Solvent content 2.25 45.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.176 α = 90 b = 48.176 β = 90 c = 94.031 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 47.02 99.9 0.049 0.06 0.035 0.999 14.6 5.6 36113
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.57 1.342 1.711 1.047 0.239 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.54 41.756 36075 1794 99.853 0.195 0.1931 0.1943 0.2224 0.2257 24.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.113 0.057 0.113 -0.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.481 r_dihedral_angle_3_deg 11.764 r_dihedral_angle_2_deg 9.192 r_dihedral_angle_1_deg 7.399 r_lrange_it 4.803 r_lrange_other 4.773 r_scangle_it 3.302 r_scangle_other 3.301 r_mcangle_it 2.417 r_mcangle_other 2.417
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.481 r_dihedral_angle_3_deg 11.764 r_dihedral_angle_2_deg 9.192 r_dihedral_angle_1_deg 7.399 r_lrange_it 4.803 r_lrange_other 4.773 r_scangle_it 3.302 r_scangle_other 3.301 r_mcangle_it 2.417 r_mcangle_other 2.417 r_scbond_it 2.307 r_scbond_other 2.306 r_angle_refined_deg 1.717 r_mcbond_it 1.668 r_mcbond_other 1.666 r_chiral_restr_other 1.339 r_angle_other_deg 0.94 r_nbd_refined 0.196 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.174 r_nbd_other 0.162 r_xyhbond_nbd_refined 0.125 r_symmetry_xyhbond_nbd_refined 0.12 r_symmetry_nbd_refined 0.085 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1834 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing