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Crystal structure of murine CRTAC1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold AF-Q8R555-F1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 100 mM sodium-malonate pH 5.0, 12% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.2 61.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 167.514 α = 90 b = 84.204 β = 102.702 c = 59.718 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2022-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.6702 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.582 81.707 86.5 0.086 0.099 0.042 0.998 10.9 4.9 54952
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.582 1.786 67.9 0.777 0.885 0.409 0.667 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.584 81.707 54950 2798 49.996 0.152 0.1501 0.1615 0.1946 0.2036 24.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 -0.569 -1.047 1.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.703 r_dihedral_angle_6_deg 15.618 r_dihedral_angle_3_deg 12.723 r_dihedral_angle_1_deg 7.602 r_lrange_it 3.729 r_lrange_other 3.474 r_rigid_bond_restr 2.834 r_scangle_it 2.402 r_scangle_other 2.402 r_mcangle_other 2.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.703 r_dihedral_angle_6_deg 15.618 r_dihedral_angle_3_deg 12.723 r_dihedral_angle_1_deg 7.602 r_lrange_it 3.729 r_lrange_other 3.474 r_rigid_bond_restr 2.834 r_scangle_it 2.402 r_scangle_other 2.402 r_mcangle_other 2.186 r_mcangle_it 2.185 r_scbond_it 1.641 r_scbond_other 1.64 r_mcbond_it 1.465 r_mcbond_other 1.451 r_angle_refined_deg 1.298 r_angle_other_deg 0.725 r_nbd_refined 0.234 r_symmetry_nbd_other 0.211 r_nbd_other 0.205 r_symmetry_nbd_refined 0.2 r_symmetry_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.151 r_metal_ion_refined 0.097 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.06 r_dihedral_angle_other_1_deg 0.022 r_gen_planes_other 0.008 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4231 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction STARANISO data scaling PHASER phasing