☰ Navigation Tabs
CDK2-cyclin A in complex with FragLite 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 Protein at 10 mg/ml. 0.6 to 0.8 M KCl, 0.9 to 1.2 M (NH4)2SO4, and 100 mM HEPES pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.81 56.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.164 α = 90 b = 133.63 β = 90 c = 147.675 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.89842 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 99.282 100 0.146 0.998 11.7 13.5 51613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.58 100 1.051 0.851 2.2 13.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.512 99.282 50452 2583 99.198 0.22 0.2184 0.2017 0.2401 0.2255 54.478
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.11 2.322 0.788
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.904 r_dihedral_angle_6_deg 16.501 r_dihedral_angle_3_deg 15.099 r_lrange_it 9.514 r_scangle_it 7.296 r_dihedral_angle_1_deg 6.174 r_mcangle_it 5.256 r_scbond_it 4.738 r_mcbond_it 3.321 r_angle_refined_deg 1.685
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.904 r_dihedral_angle_6_deg 16.501 r_dihedral_angle_3_deg 15.099 r_lrange_it 9.514 r_scangle_it 7.296 r_dihedral_angle_1_deg 6.174 r_mcangle_it 5.256 r_scbond_it 4.738 r_mcbond_it 3.321 r_angle_refined_deg 1.685 r_nbtor_refined 0.316 r_nbd_refined 0.223 r_symmetry_nbd_refined 0.218 r_symmetry_xyhbond_nbd_refined 0.166 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.105 r_bond_refined_d 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9023 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing