9EP9 | pdb_00009ep9

NMR solution structure of lipid transfer protei Sola l7 from tomato seeds

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H TOCSY	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
2	2D 1H-1H NOESY	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
3	2D 1H-1H TOCSY	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	100% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
4	2D 1H-1H NOESY	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	100% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
5	2D 1H-15N HSQC	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
6	2D 1H-13C HSQC	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
7	3D HNCO	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
8	3D HNCOi	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
9	3D HNCA	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
10	3D HNCAi	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
11	3D CBCA(CO)NH	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
12	3D HNCACB	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
13	3D H(CCO)NH	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
14	3D (H)CC(CO)NH	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
15	3D HCCH-TOCSY	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
16	3D HC(C)-TOCSY	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
17	3D H(NCOCA)NH	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800
18	3D (H)N(COCA)NH	0.7 mM [U-100% 13C; U-100% 15N] rSolal7, 1 % NA DSS	90% H2O/10% D2O	NA	5.5	NA atm	298	Bruker AVANCE 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	data analysis	Sparky		Goddard
4	data analysis	NMRView		Johnson, One Moon Scientific
5	data analysis	TALOS+		Yang Shen, Frank Delaglio, Gabriel Cornilescu & Ad Bax
6	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
7	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
8	data analysis	PyMOL		Schrodinger
9	data analysis	MOLMOL		Koradi, Billeter and Wuthrich

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.