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Human serum albumin with myristate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6WUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 50 mM Potassium phosphate pH 7.5, 31-34 % PEG3350
Crystal Properties Matthews coefficient Solvent content 2.22 44.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.321 α = 74.443 b = 87.113 β = 89.779 c = 97.471 γ = 78.573
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2022-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9763 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 72.34 97.8 0.059 0.07 0.036 0.997 9.6 3.6 67849
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 90.6 0.416 0.501 0.275 0.847 2.6 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.1 72.34 67830 3261 97.696 0.214 0.2111 0.2108 0.2689 0.2672 45.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.475 -0.491 0.553 2.238 -1.029 -2.428
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.955 r_dihedral_angle_6_deg 15.227 r_dihedral_angle_2_deg 8.989 r_lrange_other 8.748 r_lrange_it 8.746 r_scangle_it 7.506 r_scangle_other 7.506 r_dihedral_angle_1_deg 5.988 r_mcangle_it 5.613 r_mcangle_other 5.613
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.955 r_dihedral_angle_6_deg 15.227 r_dihedral_angle_2_deg 8.989 r_lrange_other 8.748 r_lrange_it 8.746 r_scangle_it 7.506 r_scangle_other 7.506 r_dihedral_angle_1_deg 5.988 r_mcangle_it 5.613 r_mcangle_other 5.613 r_scbond_it 5.178 r_scbond_other 5.178 r_mcbond_it 4.272 r_mcbond_other 4.272 r_angle_refined_deg 1.408 r_angle_other_deg 0.469 r_symmetry_nbd_refined 0.288 r_nbd_refined 0.219 r_nbd_other 0.202 r_symmetry_nbd_other 0.182 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_refined 0.17 r_xyhbond_nbd_refined 0.168 r_ncsr_local_group_1 0.084 r_symmetry_nbtor_other 0.073 r_chiral_restr 0.071 r_symmetry_xyhbond_nbd_other 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8813 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 119
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing