9E9A | pdb_00009e9a

Solution structure of an uncharacterized protein containing a DUF1893 domain from Borrelia burgdorferi, a pathogen responsible for Lyme disease. Seattle Structural Genomics Center for Infectious Disease target BobuA.17726.a.A1.

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
2	2D 1H-13C HSQC aliphatic	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
3	2D 1H-13C HSQC aromatic	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
4	3D 1H-15N NOESY	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
5	3D 1H-13C NOESY aliphatic	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
15	3D 1H-13C NOESY aromatic	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
14	3D HNCACB	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
13	3D CBCA(CO)NH	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
12	3D HCACO	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
11	3D HNCO	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
10	3D HNCA	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
9	3D C(CO)NH	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Varian VNMRS 600
8	3D HBHA(CO)NH	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Bruker Ascend 700
7	3D H(CCO)NH	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Bruker Ascend 700
6	2D 1H-15N HSQC	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Bruker Ascend 700
16	3D 1H-13C NOESY aliphatic	1 mM [U-98% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Bruker Ascend 700
17	2D 1H-13C HSQC aliphatic	1 mM [U-10% 13C; U-98% 15N] B26, 100 mM sodium chloride, 20 mM TRIS, 1 mM DTT	93% H2O/7% D2O	120 mM	7	1 atm	278	Bruker Ascend 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	VNMRS	600
2	Bruker	Ascend	700

NMR Refinement
Method	Details	Software
water refinement	STRUCTURE CALCULATIONS WERE PERFORMED ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) AFTER ADDING 0% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS AND THE VDW FOR THE LOWER LIMIT. HYDROGEN BOND RESTRAINTS WERE INTRODUCED ON THE BASIS OF SLOWLY EXCHANGING AMIDE RESONANCES OBSERVED IN THE DEUTERIUM EXCHANGE EXPERIMENT AND PROXIMITY IN EARLY STRUCTURE CALCULATIONS. STERO-ASSIGNMENTS WERE MADE FOR 10/11ON THE BASIS OF 1H-13C HSQC SPECTRUM FOR THE 10%-CARBON-13 LABELLED SAMPLE.	CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	refinement	TALOS+		Bax
4	structure calculation	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
5	refinement	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
6	chemical shift assignment	NMRtist		Klukowski, Riek and Guntert

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 9E9A | pdb_00009e9a

Solution structure of an uncharacterized protein containing a DUF1893 domain from Borrelia burgdorferi, a pathogen responsible for Lyme disease. Seattle Structural Genomics Center for Infectious Disease target BobuA.17726.a.A1.

9E9A | pdb_00009e9a