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Structure of a Mouse KC Filament
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other initial KC structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 8% PEG-500MME, 4% PEG-20,000, 100 mM of Bicine/Tris (base) pH 8.0, with 10 mM of Sodium nitrate, sodium phosphate dibasic, Ammonium sulfate.
Crystal Properties Matthews coefficient Solvent content 2.92 57.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.092 α = 90 b = 42.065 β = 90.05 c = 165.794 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 300 mm 2019-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97857 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 165.79 99.9 0.113 0.056 0.985 13.9 4 12807
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.73 100 0.85 1.215 0.602 0.592 1.23 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.6 165.79 12508 677 86.17 0.2866 0.2857 0.2832 0.3029 0.3032 RANDOM 52.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 -0.87 -2.86 2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.852 r_dihedral_angle_3_deg 11.357 r_dihedral_angle_4_deg 7.683 r_dihedral_angle_1_deg 4.176 r_angle_refined_deg 0.929 r_angle_other_deg 0.855 r_chiral_restr 0.051 r_mcangle_it 0.043 r_mcbond_it 0.023 r_mcbond_other 0.023
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.852 r_dihedral_angle_3_deg 11.357 r_dihedral_angle_4_deg 7.683 r_dihedral_angle_1_deg 4.176 r_angle_refined_deg 0.929 r_angle_other_deg 0.855 r_chiral_restr 0.051 r_mcangle_it 0.043 r_mcbond_it 0.023 r_mcbond_other 0.023 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6651 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing