☰ Navigation Tabs
Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4QY4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277.15 0.01 M ZnCl2
15% v/v PEG 6000
5.5% v/v ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.59 52.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.03 α = 90 b = 66.03 β = 90 c = 88.81 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 PIXEL DECTRIS PILATUS3 6M 2022-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.0000 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 48.08 99.9 0.179 0.188 0.058 0.996 9.2 10.5 31037
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.01 99.5 1.195 1.255 0.384 0.805 10.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.96 48.08 29669 1354 99.83 0.1966 0.19471 0.2028 0.23829 0.2434 RANDOM 28.307
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.048 r_dihedral_angle_2_deg 7.919 r_long_range_B_refined 6.281 r_long_range_B_other 6.281 r_dihedral_angle_1_deg 5.499 r_scangle_other 5.181 r_scbond_it 3.36 r_scbond_other 3.359 r_mcangle_it 3.222 r_mcangle_other 3.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.048 r_dihedral_angle_2_deg 7.919 r_long_range_B_refined 6.281 r_long_range_B_other 6.281 r_dihedral_angle_1_deg 5.499 r_scangle_other 5.181 r_scbond_it 3.36 r_scbond_other 3.359 r_mcangle_it 3.222 r_mcangle_other 3.221 r_mcbond_it 2.331 r_mcbond_other 2.33 r_angle_refined_deg 1.633 r_angle_other_deg 0.536 r_chiral_restr 0.082 r_gen_planes_refined 0.009 r_bond_refined_d 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2870 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction REFMAC phasing