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Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6HAZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277.15 0.03 M Zinc Acetate
22% v/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.33 47.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.23 α = 90 b = 62.23 β = 90 c = 89.77 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 PIXEL DECTRIS PILATUS 6M 2022-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97915 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 46.29 100 0.2 0.206 0.046 0.998 16.4 20 17249
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.33 100 1.931 1.98 0.436 0.668 20.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.26 34.49 17249 972 99.98 0.25335 0.25052 0.2528 0.30659 0.3133 RANDOM 42.316
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.524 r_long_range_B_refined 9.002 r_long_range_B_other 9.001 r_dihedral_angle_2_deg 7.845 r_dihedral_angle_1_deg 6.904 r_scangle_other 6.35 r_mcangle_it 5.664 r_mcangle_other 5.662 r_scbond_it 4.293 r_scbond_other 4.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.524 r_long_range_B_refined 9.002 r_long_range_B_other 9.001 r_dihedral_angle_2_deg 7.845 r_dihedral_angle_1_deg 6.904 r_scangle_other 6.35 r_mcangle_it 5.664 r_mcangle_other 5.662 r_scbond_it 4.293 r_scbond_other 4.292 r_mcbond_it 4.109 r_mcbond_other 4.108 r_angle_refined_deg 1.708 r_angle_other_deg 0.542 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2717 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction REFMAC phasing