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[2Fe-2S] SufU from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold AF-O53156
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 0.2 M calcium acetate hydrate, 0.1 M sodium cacodylate pH 6.5, 40% v/v PEG 3000
Crystal Properties Matthews coefficient Solvent content 2.23 44.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.118 α = 90 b = 100.118 β = 90 c = 31.333 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 35.42 100 0.995 7.8 27.3 11785
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 100 0.699
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.95 35.42 11605 578 99.983 0.18 0.1786 0.192 0.2099 0.221 Random 31.577
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.48 0.961
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.978 r_dihedral_angle_other_3_deg 12.965 r_dihedral_angle_3_deg 12.242 r_dihedral_angle_2_deg 9.32 r_lrange_other 8.715 r_lrange_it 8.662 r_scangle_other 7.894 r_scangle_it 7.889 r_dihedral_angle_1_deg 5.72 r_scbond_other 5.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.978 r_dihedral_angle_other_3_deg 12.965 r_dihedral_angle_3_deg 12.242 r_dihedral_angle_2_deg 9.32 r_lrange_other 8.715 r_lrange_it 8.662 r_scangle_other 7.894 r_scangle_it 7.889 r_dihedral_angle_1_deg 5.72 r_scbond_other 5.088 r_scbond_it 5.073 r_mcangle_it 4.147 r_mcangle_other 4.145 r_mcbond_other 3.259 r_mcbond_it 3.258 r_angle_refined_deg 1.289 r_angle_other_deg 0.397 r_nbd_refined 0.208 r_symmetry_nbd_refined 0.199 r_symmetry_nbd_other 0.184 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.105 r_nbd_other 0.098 r_symmetry_xyhbond_nbd_refined 0.092 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.054 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1110 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing