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Candida albicans Hsp90 nucleotide binding domain in complex with BRI2312
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CJR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 18% PEG6000, 0.1M Cacodylates pH 6.9,
0.2 M Mg Acetate, 20% glycerol
Crystal Properties Matthews coefficient Solvent content 2.96 58.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.054 α = 90 b = 74.054 β = 90 c = 107.513 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER R 1M 2021-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU MICROMAX-003 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 26.893 99.6 0.05 0.052 0.015 0.999 30.6 11.2 34705
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.71 93.7 0.802 0.979 0.545 0.567 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.68 26.893 34645 1744 99.492 0.163 0.1624 0.1829 0.1588 21.714
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.232 0.232 -0.464
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.36 r_dihedral_angle_3_deg 11.098 r_lrange_it 7.895 r_lrange_other 7.706 r_dihedral_angle_1_deg 6.719 r_dihedral_angle_2_deg 6.063 r_scangle_it 4.766 r_scangle_other 4.764 r_mcangle_it 4.05 r_mcangle_other 4.048
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.36 r_dihedral_angle_3_deg 11.098 r_lrange_it 7.895 r_lrange_other 7.706 r_dihedral_angle_1_deg 6.719 r_dihedral_angle_2_deg 6.063 r_scangle_it 4.766 r_scangle_other 4.764 r_mcangle_it 4.05 r_mcangle_other 4.048 r_scbond_it 3.044 r_scbond_other 3.038 r_mcbond_it 2.506 r_mcbond_other 2.504 r_angle_refined_deg 1.973 r_angle_other_deg 0.794 r_nbd_refined 0.211 r_nbtor_refined 0.169 r_symmetry_nbd_other 0.163 r_xyhbond_nbd_refined 0.158 r_symmetry_xyhbond_nbd_refined 0.144 r_nbd_other 0.13 r_symmetry_nbd_refined 0.115 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.076 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1692 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing CrysalisPro data reduction