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Candida albicans Hsp90 nucleotide binding domain in complex with BRI2311
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CJR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 18% PEG8000, 0.1M Cacodylates pH 6.5,
0.2 M MgAcetate, 20% glycerol
Crystal Properties Matthews coefficient Solvent content 2.98 58.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.874 α = 90 b = 73.874 β = 90 c = 108.817 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER R 1M 2021-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU MICROMAX-003 1.54189
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30.56 99.9 0.059 0.061 0.017 1 31 12.7 31120
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 99.4 1.145 1.317 0.635 0.546 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 30.56 29601 1480 99.936 0.176 0.1752 0.1752 0.1985 0.1985 25.622
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.642 -0.642 1.284
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.132 r_dihedral_angle_3_deg 11.88 r_lrange_it 7.981 r_lrange_other 7.647 r_dihedral_angle_1_deg 7.597 r_dihedral_angle_2_deg 5.481 r_scangle_it 5.427 r_scangle_other 5.425 r_mcangle_it 4.657 r_mcangle_other 4.655
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.132 r_dihedral_angle_3_deg 11.88 r_lrange_it 7.981 r_lrange_other 7.647 r_dihedral_angle_1_deg 7.597 r_dihedral_angle_2_deg 5.481 r_scangle_it 5.427 r_scangle_other 5.425 r_mcangle_it 4.657 r_mcangle_other 4.655 r_scbond_it 3.515 r_scbond_other 3.507 r_mcbond_it 2.941 r_mcbond_other 2.941 r_angle_refined_deg 2.247 r_angle_other_deg 1.294 r_nbd_refined 0.17 r_nbtor_refined 0.142 r_symmetry_nbd_other 0.119 r_chiral_restr 0.115 r_xyhbond_nbd_refined 0.099 r_nbd_other 0.069 r_symmetry_nbtor_other 0.061 r_symmetry_xyhbond_nbd_refined 0.051 r_symmetry_nbd_refined 0.047 r_bond_refined_d 0.013 r_gen_planes_refined 0.013 r_bond_other_d 0.008 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1695 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement Aimless data scaling CrysalisPro data reduction PHASER phasing