☰ Navigation Tabs
FGFR3 Kinase Domain with Inhibitor TYRA-300
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other FGFR3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.25 291 17% PEG Smear Medium
10% Tacsimate pH 5.25
0.2M Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 2.62 53.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.686 α = 90 b = 55.588 β = 127.452 c = 138.668 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2024-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.53 48.17 99.8 0.443 0.48 0.183 0.966 4.7 6.8 36870
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.53 2.64 100 3.534 3.817 1.428 0.21 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.53 40.003 36861 1654 99.765 0.23 0.2287 0.2326 0.2671 0.2694 54.443
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.865 -1.008 1.966 0.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.024 r_dihedral_angle_6_deg 11.556 r_dihedral_angle_2_deg 11.196 r_lrange_other 9.418 r_lrange_it 9.416 r_scangle_it 6.789 r_scangle_other 6.59 r_dihedral_angle_1_deg 6.16 r_mcangle_other 6.064 r_mcangle_it 6.062
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.024 r_dihedral_angle_6_deg 11.556 r_dihedral_angle_2_deg 11.196 r_lrange_other 9.418 r_lrange_it 9.416 r_scangle_it 6.789 r_scangle_other 6.59 r_dihedral_angle_1_deg 6.16 r_mcangle_other 6.064 r_mcangle_it 6.062 r_scbond_it 4.321 r_scbond_other 4.085 r_mcbond_it 3.813 r_mcbond_other 3.803 r_angle_refined_deg 1.037 r_angle_other_deg 0.381 r_symmetry_xyhbond_nbd_refined 0.301 r_symmetry_nbd_refined 0.205 r_nbd_refined 0.2 r_nbd_other 0.19 r_symmetry_nbd_other 0.181 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.143 r_ncsr_local_group_2 0.083 r_ncsr_local_group_3 0.077 r_symmetry_nbtor_other 0.074 r_ncsr_local_group_1 0.073 r_chiral_restr 0.052 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6577 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 227
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing