9CB2 | pdb_00009cb2

NMR structure of the S. pombe Slr1 La motif RNA binding domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
2	2D 1H-13C HSQC	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
3	2D 1H-13C HSQC aliphatic	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
4	2D 1H-13C HSQC aromatic	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
5	3D HNCACB	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
16	3D HNCA	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
15	3D HNCO	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
14	3D CBCA(CO)NH	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
13	3D HN(CA)CO	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
12	3D HCCH-TOCSY	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
11	3D HCCH-TOCSY	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
10	3D H(CCO)NH	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
9	3D 1H-15N NOESY	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700
8	3D 1H-13C NOESY	0.8 mM [U-99% 13C; U-99% 15N] Schizosaccharomyces pombe Slr1 La motif, 10 mM sodium phosphate, 60 mM sodium chloride, 0.05 % w/v sodium azide	90% H2O/10% D2O	60 mM	7.6	1 atm	298	Bruker AVANCE III HD 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	700

NMR Refinement
Method	Details	Software
simulated annealing		Rosetta

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Rosetta		Baker
2	structure calculation	CYANA	3	Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	CcpNmr Analysis		CCPN
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	peak picking	CcpNmr Analysis		CCPN