9C5E | pdb_00009c5e

Covalent Complex Between Parkin Catalytic (Rcat) Domain and Ubiquitin

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCACB	800 uM [U-13C; U-15N] Rcat domain from Parkin, 800 uM Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
2	3D CBCA(CO)NH	800 uM [U-13C; U-15N] Rcat domain from Parkin, 800 uM Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
7	3D HNCACB	300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
8	3D HNCA	300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
5	2D 1H-15N HSQC	300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
12	2D 1H-13C HSQC	300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
3	3D HNCACB	300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
4	3D CBCA(CO)NH	300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
11	3D HNCA	300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
6	2D 1H-15N HSQC	300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
13	2D 1H-13C HSQC	300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
9	2D 1H-15N HSQC	300 uM [U-13C; U-15N] Rcat domain from Parkin	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600
10	2D 1H-15N HSQC	500 uM [U-13C; U-15N] Ubiquitin G75-C3	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Varian INOVA 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing		HADDOCK

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	1000
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	NMRViewJ		Johnson and Blevins
2	structure calculation	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	structure calculation	HADDOCK		Bonvin
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax