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Covalent Complex Between Parkin Catalytic (Rcat) Domain and Ubiquitin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCACB 800 uM [U-13C; U-15N] Rcat domain from Parkin, 800 uM Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 2 3D CBCA(CO)NH 800 uM [U-13C; U-15N] Rcat domain from Parkin, 800 uM Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 7 3D HNCACB 300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 8 3D HNCA 300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 5 2D 1H-15N HSQC 300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 12 2D 1H-13C HSQC 300 uM [U-13C; U-15N] Rcat domain from Parkin, 300 uM Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 3 3D HNCACB 300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 4 3D CBCA(CO)NH 300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 11 3D HNCA 300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 6 2D 1H-15N HSQC 300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 13 2D 1H-13C HSQC 300 uM [U-13C; U-15N] Ubiquitin G75-C3, 300 uM Rcat domain from Parkin 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 9 2D 1H-15N HSQC 300 uM [U-13C; U-15N] Rcat domain from Parkin 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 10 2D 1H-15N HSQC 500 uM [U-13C; U-15N] Ubiquitin G75-C3 90% H2O/10% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing HADDOCK
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRViewJ Johnson and Blevins 2 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 structure calculation HADDOCK Bonvin 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax