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Clathrin terminal domain complexed with Pitstop 2c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4G55
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 20% PEG 3350, 150 MM POTASSIUM ACETATE, 0.1 M TRIS, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature
Crystal Properties Matthews coefficient Solvent content 2.73 54.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.562 α = 90 b = 73.674 β = 90 c = 85.108 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2014-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 42.59 99.52 0.06984 15.86 5.9 88731
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 1.217
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 42.59 84203 4528 99.36 0.18525 0.18416 0.1851 0.20584 0.1873 RANDOM 18.251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.78 1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.922 r_dihedral_angle_3_deg 11.37 r_dihedral_angle_1_deg 6.88 r_long_range_B_refined 5.776 r_long_range_B_other 5.775 r_scangle_other 4.821 r_scbond_it 3.257 r_scbond_other 3.257 r_mcangle_it 2.82 r_mcangle_other 2.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.922 r_dihedral_angle_3_deg 11.37 r_dihedral_angle_1_deg 6.88 r_long_range_B_refined 5.776 r_long_range_B_other 5.775 r_scangle_other 4.821 r_scbond_it 3.257 r_scbond_other 3.257 r_mcangle_it 2.82 r_mcangle_other 2.82 r_angle_refined_deg 1.958 r_mcbond_it 1.911 r_mcbond_other 1.863 r_angle_other_deg 0.677 r_chiral_restr 0.111 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2804 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement DIALS data reduction XSCALE data scaling MOLREP phasing