Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Amiloride-sensitive sodium channel subunits DELTA, BETA, and GAMMA
Sample Components
Human beta subunit isoform 1
Human gamma subunit isoform 1
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
342011
Reported Resolution (Å)
3.12
Resolution Method
FSC 0.5 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
Id
1 (6wth)
Refinement Space
Refinement Protocol
OTHER
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector Type
FEI FALCON III (4k x 4k)
Electron Dose (electrons/Å**2)
50
Imaging Experiment
1
Date of Experiment
Temperature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
800
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
2.7
Imaging Mode
DIFFRACTION
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
EM Software
Task
Software Package
Version
PARTICLE SELECTION
cryoSPARC
4.3.1
IMAGE ACQUISITION
SerialEM
unk
CTF CORRECTION
cryoSPARC
4.3.1
MODEL FITTING
PHENIX
1.2
MODEL REFINEMENT
ISOLDE
1.6
MODEL REFINEMENT
PHENIX
1.2
INITIAL EULER ASSIGNMENT
cryoSPARC
4.3.1
FINAL EULER ASSIGNMENT
cryoSPARC
4.3.1
CLASSIFICATION
cryoSPARC
4.3.1
RECONSTRUCTION
cryoSPARC
4.3.1
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
1121564
From blob picking in cryoSPARC with a box size of 440 with a maximum particle diameter of 165 and a minimum of 140. Minimum separation distance was 0.6 diameters