Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Cryo-EM density map of HKU1 spike glycoprotein D1 domain in complex with 9O-acetyl GD3 sialoglycan (Down_alt state, locally refined)
ELECTRON MICROSCOPY
Sample
Human coronavirus HKU1 spike glycoprotein
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
1130290
Reported Resolution (Å)
2.39
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
Id
1
Refinement Space
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Overall B Value
Fitting Procedure
Details
Symmetry-expanded particles are classified focused at D1 domain. Particles with D1 domain in active state are used in final local refinement and recon ...
Symmetry-expanded particles are classified focused at D1 domain. Particles with D1 domain in active state are used in final local refinement and reconstruction with D1-only Mask.