☰ Navigation Tabs
T450C mutant of repeat domain 2 from Clostridium perfringens adhesin CPE0147 without intramolecular ester bond
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NI6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 0.2 M MgCl2, 0.1 M Tris.HCl pH 8.5, and 30% (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.26 45.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.983 α = 95.135 b = 44.405 β = 109.36 c = 50.102 γ = 110.122
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2015-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95370 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 18.85 94.8 0.023 1 27.8 6.7 61888
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 77.4 0.352 0.787 2.4 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.35 18.85 61700 3086 94.535 0.195 0.1929 0.1999 0.2286 0.2316 15.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.003 -0.026 -0.041 0.04 0.026 -0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.526 r_dihedral_angle_3_deg 11.552 r_dihedral_angle_1_deg 6.706 r_dihedral_angle_4_deg 3.831 r_lrange_it 2.097 r_lrange_other 1.924 r_angle_other_deg 1.267 r_scangle_it 1.221 r_scangle_other 1.221 r_angle_refined_deg 1.192
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.526 r_dihedral_angle_3_deg 11.552 r_dihedral_angle_1_deg 6.706 r_dihedral_angle_4_deg 3.831 r_lrange_it 2.097 r_lrange_other 1.924 r_angle_other_deg 1.267 r_scangle_it 1.221 r_scangle_other 1.221 r_angle_refined_deg 1.192 r_mcangle_other 1.11 r_mcangle_it 1.109 r_scbond_it 0.953 r_scbond_other 0.951 r_mcbond_it 0.811 r_mcbond_other 0.798 r_rigid_bond_restr 0.541 r_symmetry_nbd_refined 0.248 r_nbd_refined 0.223 r_nbd_other 0.218 r_symmetry_nbd_other 0.172 r_nbtor_refined 0.142 r_xyhbond_nbd_refined 0.116 r_symmetry_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.068 r_chiral_restr 0.044 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2146 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing