☰ Navigation Tabs
Crystal structure of trypsin at 150 Kelvin with benzamidine (duplicate)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S0R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.4 298 0.2 M Potassium phosphate dibasic, 20% w/v Polyethylene glycol 3,350.
Crystal Properties Matthews coefficient Solvent content 2.27 45.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.474 α = 90 b = 58.286 β = 90 c = 66.751 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CMOS BRUKER PHOTON 100 2023-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER TURBO X-RAY SOURCE 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.495 24.688 99.21 0.717 12.23 10 34048
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 24.68 0.717
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.495 24.688 34048 1692 97.122 0.204 0.2029 0.2123 0.2344 0.2445 9.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.195 -0.011 0.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.494 r_dihedral_angle_6_deg 13.353 r_dihedral_angle_3_deg 11.433 r_dihedral_angle_1_deg 7.317 r_lrange_it 5.358 r_lrange_other 4.53 r_scangle_it 2.449 r_scangle_other 2.449 r_angle_refined_deg 1.768 r_mcangle_it 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.494 r_dihedral_angle_6_deg 13.353 r_dihedral_angle_3_deg 11.433 r_dihedral_angle_1_deg 7.317 r_lrange_it 5.358 r_lrange_other 4.53 r_scangle_it 2.449 r_scangle_other 2.449 r_angle_refined_deg 1.768 r_mcangle_it 1.7 r_mcangle_other 1.7 r_scbond_it 1.617 r_scbond_other 1.616 r_mcbond_it 1.14 r_mcbond_other 1.137 r_dihedral_angle_other_2_deg 0.803 r_angle_other_deg 0.615 r_xyhbond_nbd_refined 0.289 r_nbd_refined 0.215 r_symmetry_nbd_other 0.195 r_symmetry_xyhbond_nbd_refined 0.193 r_nbtor_refined 0.175 r_nbd_other 0.158 r_symmetry_nbd_refined 0.148 r_metal_ion_refined 0.125 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.085 r_symmetry_xyhbond_nbd_other 0.044 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SCALA data scaling MOLREP phasing