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TtCS-intermediate complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold A0A0S3QTD0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289.15 0.1M BIS-TRIS pH 6.5, 2.4M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.63 53.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.91 α = 90 b = 109.91 β = 90 c = 265.09 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-01-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL10U2 0.9792 SSRF BL10U2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 34.46 100 0.181 0.189 0.999 19.3 25.7 98252
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.13 1.313 0.363 0.896
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.08 34.46 93238 4900 99.96 0.17326 0.17098 0.1809 0.21672 0.2253 RANDOM 39.132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.966 r_long_range_B_other 8.058 r_long_range_B_refined 8.057 r_dihedral_angle_2_deg 7.435 r_scangle_other 7.018 r_dihedral_angle_1_deg 6.312 r_scbond_it 4.766 r_scbond_other 4.766 r_mcangle_it 4.448 r_mcangle_other 4.448
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.966 r_long_range_B_other 8.058 r_long_range_B_refined 8.057 r_dihedral_angle_2_deg 7.435 r_scangle_other 7.018 r_dihedral_angle_1_deg 6.312 r_scbond_it 4.766 r_scbond_other 4.766 r_mcangle_it 4.448 r_mcangle_other 4.448 r_mcbond_it 3.447 r_mcbond_other 3.447 r_angle_refined_deg 1.555 r_angle_other_deg 0.48 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10694 Nucleic Acid Atoms Solvent Atoms 598 Heterogen Atoms 174
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing