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The Crystal Structure of TAB1 from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2POM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2M Li2SO4, 0.1M Tris-HCl pH8.5, 16% PEG 4000
Crystal Properties Matthews coefficient Solvent content 4.91 74.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.525 α = 90 b = 144.525 β = 90 c = 66.218 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.35 48.82 100 0.184 9.5 10 11715
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.35 3.62 1.168
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.35 48.82 11714 555 99.923 0.203 0.2007 0.2042 0.2521 0.2604 115.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.867 0.433 0.867 -2.812
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.586 r_lrange_it 12.753 r_lrange_other 12.752 r_dihedral_angle_6_deg 10.001 r_mcangle_it 8.972 r_mcangle_other 8.97 r_scangle_it 8.893 r_scangle_other 8.891 r_dihedral_angle_1_deg 5.727 r_mcbond_it 5.396
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.586 r_lrange_it 12.753 r_lrange_other 12.752 r_dihedral_angle_6_deg 10.001 r_mcangle_it 8.972 r_mcangle_other 8.97 r_scangle_it 8.893 r_scangle_other 8.891 r_dihedral_angle_1_deg 5.727 r_mcbond_it 5.396 r_mcbond_other 5.396 r_scbond_it 5.124 r_scbond_other 5.123 r_dihedral_angle_2_deg 4.218 r_angle_refined_deg 0.819 r_angle_other_deg 0.269 r_symmetry_xyhbond_nbd_refined 0.241 r_nbd_refined 0.206 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.132 r_nbd_other 0.122 r_symmetry_nbtor_other 0.076 r_symmetry_xyhbond_nbd_other 0.044 r_chiral_restr 0.035 r_symmetry_nbd_refined 0.019 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2736 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing