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The Crystal Structure of RSK2 from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M sodium malonate pH6.75, 18% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.15 42.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.063 α = 90 b = 273.373 β = 92.135 c = 170.341 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.979514 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 48.213 99.4 0.23 5.9 4.2 50864
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.28 0.947
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.2 48.213 50823 2573 99.394 0.233 0.2289 0.2305 0.3027 0.299 53.355
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.03 1.225 1.187 1.748
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.525 r_dihedral_angle_3_deg 13.15 r_dihedral_angle_6_deg 12.599 r_lrange_it 5.748 r_lrange_other 5.748 r_dihedral_angle_1_deg 5.609 r_mcangle_it 3.167 r_mcangle_other 3.167 r_scangle_it 2.401 r_scangle_other 2.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.525 r_dihedral_angle_3_deg 13.15 r_dihedral_angle_6_deg 12.599 r_lrange_it 5.748 r_lrange_other 5.748 r_dihedral_angle_1_deg 5.609 r_mcangle_it 3.167 r_mcangle_other 3.167 r_scangle_it 2.401 r_scangle_other 2.401 r_mcbond_it 1.739 r_mcbond_other 1.739 r_scbond_it 1.265 r_scbond_other 1.265 r_angle_refined_deg 0.737 r_angle_other_deg 0.251 r_nbd_refined 0.187 r_nbtor_refined 0.178 r_symmetry_nbd_other 0.177 r_symmetry_nbd_refined 0.154 r_xyhbond_nbd_refined 0.139 r_symmetry_xyhbond_nbd_refined 0.135 r_nbd_other 0.134 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.035 r_chiral_restr_other 0.014 r_symmetry_xyhbond_nbd_other 0.01 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21768 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 270
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing