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Structure of a N-Me-D-Gln4,Lys10-teixobactin analogue
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SAD PHASED STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 PEG3350, MgCl2
Crystal Properties Matthews coefficient Solvent content 1.65 25.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.88 α = 90 b = 24.88 β = 90 c = 106.315 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2018-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.99997 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 24.88 99.9 0.01774 0.02509 0.01774 1 24.09 2 10322 14.35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.554 100 0.1934 0.2735 0.1934 0.916 4.24 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.5 24.88 1.4 10318 1030 99.91 0.1574 0.1544 0.1544 0.1831 0.1831 282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 31.778 f_angle_d 2.013 f_chiral_restr 0.098 f_bond_d 0.014 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 696 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 32
Software Software Software Name Purpose PHENIX refinement BOS data collection XDS data reduction pointless data scaling Aimless data scaling PHENIX phasing PHASER phasing