8TG0 | pdb_00008tg0

Solution NMR structure of the cold shock domain of the Arabidopsis thaliana glycine-rich protein AtGRP2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-100% 15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
23D HNCACB20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III 800
33D CBCA(CO)NH20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III 800
43D HNCA20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III 800
53D HNCO20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III 800
63D HN(CA)CO20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III 800
73D HBHA(CO)NH20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III 800
82D 1H-13C HSQC20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
93D CC(CO)NH20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
103D HCCH-TOCSY20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
113D HCCH-TOCSY20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
122D (HB)CB(CGCD)HD20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
132D (HB)CB(CGCDCE)HE20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
142D 1H-1H TOCSY20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM cold shock protein 2100% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
153D 1H-13C NOESY aliphatic20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
163D 1H-15N NOESY20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM [U-13C; U-15N] cold shock protein 295% H2O/5% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
172D 1H-1H NOESY20 mM sodium phosphate, 50 mM sodium chloride, 250 uM PMSF, 3 mM sodium azide, 1.3 mM cold shock protein 2100% D2ONaCl 50 mM6.51 atm298Bruker AVANCE III HD 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD900
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingThe structures are based on a total of 2216 restraints, 2150 of which are NOE-derived distance constraints and 66 are dihedral angle restraintsCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCARAKeller and Wuthrich
5chemical shift assignmentCcpNmr AnalysisCCPN
2structure calculationCNSBrunger, Adams, Clore, Gros, Nilges and Read
3refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
4peak pickingCcpNmr AnalysisCCPN