8TG0 | pdb_00008tg0

Solution NMR structure of the cold shock domain of the Arabidopsis thaliana glycine-rich protein AtGRP2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BRCT_2	e8tg0A01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: BRCT_2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00313	'Cold-shock' DNA-binding domain (CSD)	'Cold-shock' DNA-binding domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Cold shock protein 2	binding nucleic acid binding RNA folding chaperone RNA binding mRNA binding DNA binding double-stranded DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding single-stranded DNA binding	developmental process multicellular organismal process reproductive system development reproductive process developmental process involved in reproduction multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development system development response to acid chemical response to stimulus developmental process multicellular organismal process reproductive system development reproductive process developmental process involved in reproduction multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development system development response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation response to desiccation response to cold response to temperature stimulus cold acclimation vegetative to reproductive phase transition of meristem plant organ development floral whorl development stamen development flower development reproductive shoot system development shoot system development phyllome development androecium development floral organ development response to abscisic acid response to lipid response to hormone response to alcohol response to endogenous stimulus cellular respiration regulation of biological process regulation of cellular process energy derivation by oxidation of organic compounds biological regulation regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of cellular respiration metabolic process cellular process regulation of metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen vesicle cytoplasm cytosol cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001878	Zinc finger, CCHC-type	Domain
A	IPR002059	Cold-shock protein Csp, DNA-binding	Domain
A	IPR019844	Cold-shock domain, conserved site	Conserved Site
A	IPR011129	Cold-shock domain	Domain
A	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.