8T86

Racemic mixture of amylin segment 25-AILSS-29 forms heterochiral rippled beta-sheet


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE298hexafluoroisopropanol, water
Crystal Properties
Matthews coefficientSolvent content
1.5420.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 9.5α = 90.452
b = 9.88β = 98.132
c = 16.29γ = 94.376
Symmetry
Space GroupP -1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2022-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.97918APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.116.12380.30.1420.1590.9924.865.11898
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.160.9551.0670.651

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGFREE R-VALUE1.10216.123189719080.7230.1540.15170.179312.265
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.46-0.123-1.1050.488-0.2190.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg5.424
r_lrange_other4.945
r_lrange_it4.7
r_dihedral_angle_1_deg2.795
r_scangle_other1.152
r_scangle_it1.134
r_mcangle_it1.013
r_mcangle_other0.996
r_mcbond_it0.838
r_scbond_it0.834
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg5.424
r_lrange_other4.945
r_lrange_it4.7
r_dihedral_angle_1_deg2.795
r_scangle_other1.152
r_scangle_it1.134
r_mcangle_it1.013
r_mcangle_other0.996
r_mcbond_it0.838
r_scbond_it0.834
r_mcbond_other0.829
r_angle_refined_deg0.754
r_scbond_other0.698
r_rigid_bond_restr0.386
r_angle_other_deg0.287
r_nbd_other0.16
r_symmetry_nbd_other0.152
r_nbtor_refined0.123
r_nbd_refined0.104
r_symmetry_nbtor_other0.097
r_symmetry_xyhbond_nbd_refined0.094
r_xyhbond_nbd_refined0.057
r_chiral_restr0.033
r_symmetry_nbd_refined0.018
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms34
Nucleic Acid Atoms
Solvent Atoms5
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
XDSdata reduction
SHELXDphasing