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Hydrophobic Interactions Drive the Tetrameric Assembly of the TRIM45 Coiled-Coil Domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8SDE Helix with alanines from TRIM29
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 0.2M Ammonium dihydrogen phosphate, 35% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 3.57 65.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.85 α = 90 b = 55.85 β = 90 c = 347.219 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 11.985 97.6 0.037 1 11.9 4.1 14141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 98.7 0.267 0.978 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.7 11.985 14134 655 97.321 0.241 0.2393 0.2393 0.2707 0.2707 101.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.774 8.774 -17.547
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.53 r_dihedral_angle_3_deg 22.276 r_dihedral_angle_4_deg 21.72 r_lrange_it 19.825 r_scangle_it 18.056 r_mcangle_it 12.707 r_scbond_it 12.482 r_mcbond_it 8.839 r_dihedral_angle_1_deg 5.737 r_angle_refined_deg 1.645
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.53 r_dihedral_angle_3_deg 22.276 r_dihedral_angle_4_deg 21.72 r_lrange_it 19.825 r_scangle_it 18.056 r_mcangle_it 12.707 r_scbond_it 12.482 r_mcbond_it 8.839 r_dihedral_angle_1_deg 5.737 r_angle_refined_deg 1.645 r_nbtor_refined 0.317 r_symmetry_nbd_refined 0.305 r_nbd_refined 0.284 r_symmetry_xyhbond_nbd_refined 0.198 r_chiral_restr 0.139 r_xyhbond_nbd_refined 0.121 r_bond_refined_d 0.006 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2528 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHENIX phasing