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Co-crystal structure of TEAD1 with OPN-9652
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other IN HOUSE MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 buffer, salt and precipitant
Crystal Properties Matthews coefficient Solvent content 3.31 62.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.957 α = 90 b = 120.957 β = 90 c = 155.52 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 16M 2024-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.885603 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.031 104.752 95.4 0.99 6.5 12.6 81249
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.031 2.066 0.664
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.031 104.752 81103 647 95.156 0.224 0.2233 0.2258 0.2581 0.2625 39.692
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.609 0.304 0.609 -1.975
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.784 r_dihedral_angle_4_deg 13.153 r_dihedral_angle_3_deg 11.767 r_dihedral_angle_1_deg 7.146 r_lrange_it 5.894 r_lrange_other 5.832 r_dihedral_angle_other_3_deg 4.424 r_mcangle_other 3.153 r_mcangle_it 3.152 r_scangle_it 2.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.784 r_dihedral_angle_4_deg 13.153 r_dihedral_angle_3_deg 11.767 r_dihedral_angle_1_deg 7.146 r_lrange_it 5.894 r_lrange_other 5.832 r_dihedral_angle_other_3_deg 4.424 r_mcangle_other 3.153 r_mcangle_it 3.152 r_scangle_it 2.732 r_scangle_other 2.731 r_mcbond_it 1.787 r_mcbond_other 1.787 r_scbond_it 1.575 r_scbond_other 1.575 r_angle_refined_deg 1.336 r_angle_other_deg 1.099 r_nbtor_refined 0.149 r_nbd_refined 0.144 r_symmetry_nbd_other 0.144 r_symmetry_nbd_refined 0.138 r_nbd_other 0.13 r_xyhbond_nbd_refined 0.11 r_symmetry_xyhbond_nbd_refined 0.094 r_symmetry_nbtor_other 0.065 r_ncsr_local_group_2 0.05 r_chiral_restr 0.046 r_ncsr_local_group_3 0.046 r_ncsr_local_group_1 0.045 r_ncsr_local_group_5 0.044 r_ncsr_local_group_6 0.043 r_ncsr_local_group_4 0.042 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6959 Nucleic Acid Atoms Solvent Atoms 591 Heterogen Atoms 276
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing