8Q29

TtX122A - A domain of unknown function from the Teredinibacter turnerae protein TERTU_3803


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2920.1 M magnesium acetate, 15-25% PEG-3350
Crystal Properties
Matthews coefficientSolvent content
2.1743.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.081α = 90
b = 75.167β = 107.423
c = 69.074γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-05-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.97952DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.549.5598.20.0470.060.0370.99914.54.573564
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.530.4090.5230.3220.8814.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.549.5573539352998.0190.1140.11220.156319.013
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.3810.3260.727-0.461
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.371
r_lrange_it14.525
r_lrange_other14.524
r_dihedral_angle_3_deg12.894
r_scangle_it11.296
r_scangle_other11.294
r_mcangle_other9.228
r_mcangle_it9.225
r_scbond_it8.582
r_scbond_other8.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.371
r_lrange_it14.525
r_lrange_other14.524
r_dihedral_angle_3_deg12.894
r_scangle_it11.296
r_scangle_other11.294
r_mcangle_other9.228
r_mcangle_it9.225
r_scbond_it8.582
r_scbond_other8.58
r_dihedral_angle_1_deg7.952
r_mcbond_it7.057
r_mcbond_other7.029
r_dihedral_angle_2_deg4.84
r_rigid_bond_restr4.777
r_angle_refined_deg1.779
r_angle_other_deg0.664
r_symmetry_xyhbond_nbd_refined0.21
r_nbd_refined0.195
r_symmetry_nbd_other0.195
r_nbd_other0.187
r_nbtor_refined0.176
r_xyhbond_nbd_refined0.131
r_symmetry_nbd_refined0.116
r_chiral_restr0.105
r_symmetry_nbtor_other0.089
r_metal_ion_refined0.062
r_bond_refined_d0.014
r_xyhbond_nbd_other0.014
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3756
Nucleic Acid Atoms
Solvent Atoms390
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
SHELXphasing
XDSdata reduction