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TtX122A - A domain of unknown function from the Teredinibacter turnerae protein TERTU_3803
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 0.1 M magnesium acetate, 15-25% PEG-3350
Crystal Properties Matthews coefficient Solvent content 2.17 43.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.081 α = 90 b = 75.167 β = 107.423 c = 69.074 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97952 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 49.55 98.2 0.047 0.06 0.037 0.999 14.5 4.5 73564
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.409 0.523 0.322 0.881 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 49.55 73539 3529 98.019 0.114 0.1122 0.1111 0.1563 0.1551 19.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.381 0.326 0.727 -0.461
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.371 r_lrange_it 14.525 r_lrange_other 14.524 r_dihedral_angle_3_deg 12.894 r_scangle_it 11.296 r_scangle_other 11.294 r_mcangle_other 9.228 r_mcangle_it 9.225 r_scbond_it 8.582 r_scbond_other 8.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.371 r_lrange_it 14.525 r_lrange_other 14.524 r_dihedral_angle_3_deg 12.894 r_scangle_it 11.296 r_scangle_other 11.294 r_mcangle_other 9.228 r_mcangle_it 9.225 r_scbond_it 8.582 r_scbond_other 8.58 r_dihedral_angle_1_deg 7.952 r_mcbond_it 7.057 r_mcbond_other 7.029 r_dihedral_angle_2_deg 4.84 r_rigid_bond_restr 4.777 r_angle_refined_deg 1.779 r_angle_other_deg 0.664 r_symmetry_xyhbond_nbd_refined 0.21 r_nbd_refined 0.195 r_symmetry_nbd_other 0.195 r_nbd_other 0.187 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.131 r_symmetry_nbd_refined 0.116 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.089 r_metal_ion_refined 0.062 r_bond_refined_d 0.014 r_xyhbond_nbd_other 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3756 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement Aimless data scaling SHELX phasing XDS data reduction