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Aplysia californica acetylcholine-binding protein in complex with Spiroimine (+)-4 R
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BYN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 17% polyethylene glycol 4K (w/v), 0.1 M TRIS-HCL pH 7.5, 0.2 M sodium citrate pH 6.0, 10% glycerol 10% (v/v)
Crystal Properties Matthews coefficient Solvent content 2.66 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.977 α = 90 b = 114.995 β = 90 c = 129.956 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2010-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9334 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.18 100 0.079 0.086 0.034 0.999 15.5 6.2 89606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.04 99.9 0.878 0.959 0.383 0.699 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 48.18 84991 4537 99.92 0.17295 0.1712 0.1818 0.20604 0.2148 RANDOM 33.431
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 -0.63 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.939 r_dihedral_angle_4_deg 20.07 r_dihedral_angle_3_deg 11.663 r_long_range_B_other 7.266 r_long_range_B_refined 7.26 r_dihedral_angle_1_deg 7.065 r_scangle_other 5.378 r_mcangle_it 3.789 r_mcangle_other 3.789 r_scbond_it 3.603
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.939 r_dihedral_angle_4_deg 20.07 r_dihedral_angle_3_deg 11.663 r_long_range_B_other 7.266 r_long_range_B_refined 7.26 r_dihedral_angle_1_deg 7.065 r_scangle_other 5.378 r_mcangle_it 3.789 r_mcangle_other 3.789 r_scbond_it 3.603 r_scbond_other 3.602 r_mcbond_it 2.676 r_mcbond_other 2.676 r_angle_refined_deg 1.472 r_angle_other_deg 1.304 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8393 Nucleic Acid Atoms Solvent Atoms 784 Heterogen Atoms 149
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing