8Q1M

Aplysia californica acetylcholine-binding protein in complex with Spiroimine (+)-4 R


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.429317% polyethylene glycol 4K (w/v), 0.1 M TRIS-HCL pH 7.5, 0.2 M sodium citrate pH 6.0, 10% glycerol 10% (v/v)
Crystal Properties
Matthews coefficientSolvent content
2.6654

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.977α = 90
b = 114.995β = 90
c = 129.956γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42010-09-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.9334ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1248.181000.0790.0860.0340.99915.56.289606
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0499.90.8780.9590.3830.6996.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT248.1884991453799.920.172950.17120.20604RANDOM33.431
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.4-0.630.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.939
r_dihedral_angle_4_deg20.07
r_dihedral_angle_3_deg11.663
r_long_range_B_other7.266
r_long_range_B_refined7.26
r_dihedral_angle_1_deg7.065
r_scangle_other5.378
r_mcangle_it3.789
r_mcangle_other3.789
r_scbond_it3.603
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.939
r_dihedral_angle_4_deg20.07
r_dihedral_angle_3_deg11.663
r_long_range_B_other7.266
r_long_range_B_refined7.26
r_dihedral_angle_1_deg7.065
r_scangle_other5.378
r_mcangle_it3.789
r_mcangle_other3.789
r_scbond_it3.603
r_scbond_other3.602
r_mcbond_it2.676
r_mcbond_other2.676
r_angle_refined_deg1.472
r_angle_other_deg1.304
r_chiral_restr0.064
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8393
Nucleic Acid Atoms
Solvent Atoms784
Heterogen Atoms149

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing