☰ Navigation Tabs
Human IGF1R with inhibitor 56
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other IGF1R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M HEPES pH 7.5-8.5, 9-12 % PEG3350, 5 mM CoCl2, 5 mM CdCl2, 5 mM MgCl2, and 5 mM NiCl2
Crystal Properties Matthews coefficient Solvent content 2.32 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.128 α = 90 b = 69.128 β = 90 c = 142.382 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 71.19 88.9 0.05 29.1 12.6 34057
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.8 0.91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.71 62.186 33971 1697 89.037 0.17 0.1682 0.1774 0.2087 0.215 39.482
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.743 1.743 -3.486
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.197 r_dihedral_angle_3_deg 15.956 r_dihedral_angle_4_deg 14.517 r_dihedral_angle_1_deg 7.122 r_lrange_it 6.601 r_lrange_other 6.483 r_scangle_it 3.619 r_scangle_other 3.618 r_mcangle_it 2.706 r_mcangle_other 2.706
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.197 r_dihedral_angle_3_deg 15.956 r_dihedral_angle_4_deg 14.517 r_dihedral_angle_1_deg 7.122 r_lrange_it 6.601 r_lrange_other 6.483 r_scangle_it 3.619 r_scangle_other 3.618 r_mcangle_it 2.706 r_mcangle_other 2.706 r_scbond_it 2.329 r_scbond_other 2.328 r_angle_refined_deg 2.065 r_mcbond_it 1.681 r_mcbond_other 1.678 r_angle_other_deg 1.522 r_nbd_refined 0.218 r_nbd_other 0.195 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.161 r_symmetry_nbd_refined 0.126 r_chiral_restr 0.107 r_symmetry_xyhbond_nbd_refined 0.094 r_symmetry_nbtor_other 0.087 r_metal_ion_refined 0.063 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2175 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing