8PYN

Human IGF1R with inhibitor 56


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 M HEPES pH 7.5-8.5, 9-12 % PEG3350, 5 mM CoCl2, 5 mM CdCl2, 5 mM MgCl2, and 5 mM NiCl2
Crystal Properties
Matthews coefficientSolvent content
2.3246.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.128α = 90
b = 69.128β = 90
c = 142.382γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2017-05-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.999SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7171.1988.90.0529.112.634057
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.711.80.91

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.7162.18633971169789.0370.170.16820.208739.482
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.7431.743-3.486
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.197
r_dihedral_angle_3_deg15.956
r_dihedral_angle_4_deg14.517
r_dihedral_angle_1_deg7.122
r_lrange_it6.601
r_lrange_other6.483
r_scangle_it3.619
r_scangle_other3.618
r_mcangle_it2.706
r_mcangle_other2.706
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.197
r_dihedral_angle_3_deg15.956
r_dihedral_angle_4_deg14.517
r_dihedral_angle_1_deg7.122
r_lrange_it6.601
r_lrange_other6.483
r_scangle_it3.619
r_scangle_other3.618
r_mcangle_it2.706
r_mcangle_other2.706
r_scbond_it2.329
r_scbond_other2.328
r_angle_refined_deg2.065
r_mcbond_it1.681
r_mcbond_other1.678
r_angle_other_deg1.522
r_nbd_refined0.218
r_nbd_other0.195
r_symmetry_nbd_other0.179
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.161
r_symmetry_nbd_refined0.126
r_chiral_restr0.107
r_symmetry_xyhbond_nbd_refined0.094
r_symmetry_nbtor_other0.087
r_metal_ion_refined0.063
r_bond_refined_d0.016
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2175
Nucleic Acid Atoms
Solvent Atoms167
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing