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Human IGF1R with inhibitor 53
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other IGF1R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M HEPES pH 7.5-8.5, 9-12 % PEG3350, 5 mM CoCl2, 5 mM CdCl2, 5 mM MgCl2, and 5 mM NiCl2
Crystal Properties Matthews coefficient Solvent content 2.24 45.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.502 α = 90 b = 68.502 β = 90 c = 140.07 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.93 140.07 100 0.16 17.4 12.6 7760
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.93 3.08 1.17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.93 61.537 7672 365 100 0.191 0.1884 0.2495 0.2272 71.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.982 3.982 -7.963
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.198 r_dihedral_angle_3_deg 21.187 r_dihedral_angle_4_deg 15.491 r_dihedral_angle_1_deg 9.179 r_lrange_it 5.759 r_lrange_other 5.754 r_scangle_it 3.319 r_scangle_other 3.318 r_mcangle_it 3.081 r_mcangle_other 3.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.198 r_dihedral_angle_3_deg 21.187 r_dihedral_angle_4_deg 15.491 r_dihedral_angle_1_deg 9.179 r_lrange_it 5.759 r_lrange_other 5.754 r_scangle_it 3.319 r_scangle_other 3.318 r_mcangle_it 3.081 r_mcangle_other 3.08 r_scbond_it 1.979 r_scbond_other 1.979 r_angle_refined_deg 1.843 r_mcbond_it 1.825 r_mcbond_other 1.823 r_angle_other_deg 1.291 r_symmetry_metal_ion_refined 0.797 r_symmetry_nbd_refined 0.299 r_nbd_other 0.248 r_nbd_refined 0.22 r_symmetry_xyhbond_nbd_refined 0.203 r_xyhbond_nbd_refined 0.2 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.174 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_symmetry_xyhbond_nbd_other 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2209 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing