8PYL

Human IGF1R with inhibitor 53


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 M HEPES pH 7.5-8.5, 9-12 % PEG3350, 5 mM CoCl2, 5 mM CdCl2, 5 mM MgCl2, and 5 mM NiCl2
Crystal Properties
Matthews coefficientSolvent content
2.2445.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.502α = 90
b = 68.502β = 90
c = 140.07γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2017-06-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.999SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.93140.071000.1617.412.67760
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.933.081.17

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.9361.53776723651000.1910.18840.249571.715
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.9823.982-7.963
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.198
r_dihedral_angle_3_deg21.187
r_dihedral_angle_4_deg15.491
r_dihedral_angle_1_deg9.179
r_lrange_it5.759
r_lrange_other5.754
r_scangle_it3.319
r_scangle_other3.318
r_mcangle_it3.081
r_mcangle_other3.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.198
r_dihedral_angle_3_deg21.187
r_dihedral_angle_4_deg15.491
r_dihedral_angle_1_deg9.179
r_lrange_it5.759
r_lrange_other5.754
r_scangle_it3.319
r_scangle_other3.318
r_mcangle_it3.081
r_mcangle_other3.08
r_scbond_it1.979
r_scbond_other1.979
r_angle_refined_deg1.843
r_mcbond_it1.825
r_mcbond_other1.823
r_angle_other_deg1.291
r_symmetry_metal_ion_refined0.797
r_symmetry_nbd_refined0.299
r_nbd_other0.248
r_nbd_refined0.22
r_symmetry_xyhbond_nbd_refined0.203
r_xyhbond_nbd_refined0.2
r_symmetry_nbd_other0.197
r_nbtor_refined0.174
r_symmetry_nbtor_other0.085
r_chiral_restr0.078
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_symmetry_xyhbond_nbd_other0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2209
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing