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Crystal structure of wild type p63-p73 heterotetramer (tetramerisation domain) in complex with darpin 1810 F11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FP7 experimental model PDB 5HOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293.15 0.2M sodium chloride, 25% PEG3350, 0.1M bis-tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.704 α = 90 b = 60.728 β = 100.78 c = 53.866 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 49.05 99.4 0.099 0.113 0.042 0.998 8.6 7 12746
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 0.777 0.905 0.344 0.883 2.1 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 49.05 12100 643 99.24 0.19226 0.18932 0.1959 0.25012 0.255 RANDOM 61.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.86 6.78 -6.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.858 r_dihedral_angle_4_deg 17.754 r_dihedral_angle_3_deg 16.355 r_long_range_B_refined 7.201 r_long_range_B_other 7.199 r_dihedral_angle_1_deg 6.986 r_scangle_other 5.296 r_mcangle_it 3.807 r_mcangle_other 3.806 r_scbond_it 3.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.858 r_dihedral_angle_4_deg 17.754 r_dihedral_angle_3_deg 16.355 r_long_range_B_refined 7.201 r_long_range_B_other 7.199 r_dihedral_angle_1_deg 6.986 r_scangle_other 5.296 r_mcangle_it 3.807 r_mcangle_other 3.806 r_scbond_it 3.257 r_scbond_other 3.255 r_mcbond_other 2.415 r_mcbond_it 2.414 r_angle_refined_deg 1.277 r_angle_other_deg 1.243 r_chiral_restr 0.061 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2068 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing