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Why does the herpes simplex 1 virus-encoded UL49.5 protein fail to inhibit the TAP-dependent antigen presentation?
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 0.4 mM NA- NHSV 90% H2O/10% D2O 50 mM 7.5 1 bar 303 Varian INOVA 500 2 2D 1H-1H NOESY 0.4 mM NA- NHSV 90% H2O/10% D2O 50 mM 7.5 1 bar 303 Varian INOVA 500 3 2D 1H-1H NOESY 0.4 mM NA- NHSV 90% H2O/10% D2O 50 mM 7.5 1 bar 303 Bruker AVANCE 700 4 2D 1H-1H TOCSY 0.4 mM NA- NHSV 90% H2O/10% D2O 50 mM 7.5 1 bar 303 Bruker AVANCE 700 5 2D 1H-1H ROESY 0.4 mM NA- NHSV 90% H2O/10% D2O 50 mM 7.5 1 bar 303 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Bruker AVANCE 700
NMR Refinement Method Details Software molecular dynamics 243 restraints were used Amber
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 10 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection VnmrJ 4.3 Agilent Inc. 2 collection TopSpin 3.5 Bruker Biospin 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis Sparky Goddard 5 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman