☰ Navigation Tabs
VHH Z70 mutant 1 in interaction with PHF6 Tau peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7QCQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 1.7M Ammonium Sulfate, 4.25% Isopropanol, 15% lLycerol
Crystal Properties Matthews coefficient Solvent content 3.05 59.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.165 α = 90 b = 135.165 β = 90 c = 35.411 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.978565 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 44.24 100 0.155 0.159 0.034 1 20 39.5 17371
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.87 3.123 3.2 0.7 0.902 39.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.83 44.24 17355 866 99.948 0.199 0.1976 0.1961 0.2301 0.2285 30.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.002 0.501 1.002 -3.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.848 r_dihedral_angle_6_deg 17.714 r_dihedral_angle_3_deg 13.461 r_lrange_it 9.538 r_lrange_other 9.488 r_scangle_it 7.249 r_scangle_other 7.246 r_dihedral_angle_1_deg 6.902 r_mcangle_it 5.781 r_mcangle_other 5.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.848 r_dihedral_angle_6_deg 17.714 r_dihedral_angle_3_deg 13.461 r_lrange_it 9.538 r_lrange_other 9.488 r_scangle_it 7.249 r_scangle_other 7.246 r_dihedral_angle_1_deg 6.902 r_mcangle_it 5.781 r_mcangle_other 5.779 r_scbond_it 4.924 r_scbond_other 4.919 r_mcbond_other 4.196 r_mcbond_it 4.195 r_angle_refined_deg 1.827 r_angle_other_deg 0.61 r_nbd_refined 0.227 r_symmetry_nbd_other 0.198 r_symmetry_nbd_refined 0.192 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.178 r_nbd_other 0.175 r_symmetry_xyhbond_nbd_refined 0.166 r_symmetry_nbtor_other 0.093 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 919 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Coot model building XDS data reduction Aimless data scaling MOLREP phasing