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lipopolysaccharide-binding domain-LBDB
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 1D 1H 5 mM LBDB 90% H2O/10% D2O 5 mM 7 1 Pa 298 Bruker AVANCE III 700 2 2D 1H-1H TOCSY 5 mM LBDB 90% H2O/10% D2O 5 mM 7 1 Pa 298 Bruker AVANCE III 700 3 2D 1H-13C HSQC 5 mM LBDB 90% H2O/10% D2O 5 mM 7 1 Pa 298 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis NMRView Johnson, One Moon Scientific 3 chemical shift assignment TALOS Cornilescu, Delaglio and Bax 5 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 2 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 6 data analysis MOLMOL Koradi, Billeter and Wuthrich 7 data analysis PROCHECK / PROCHECK-NMR Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton